注册 登录  
 加关注
   显示下一条  |  关闭
温馨提示!由于新浪微博认证机制调整,您的新浪微博帐号绑定已过期,请重新绑定!立即重新绑定新浪微博》  |  关闭

Bioinformatics home

 
 
 

日志

 
 

circos 染色体画图  

2012-10-26 08:10:56|  分类: 生物信息编程 |  标签: |举报 |字号 订阅

  下载LOFTER 我的照片书  |
/home/leon/software/circos/circos-0.62/bin/circos   -conf circos.conf 

正常染色体编号从chr0-chr24 chX chY chM,如果染色体数超过24,则报错。
etc/colors.ucsc.conf 里为大号染色体添加颜色
如:

chr25 = 100,150,175

 

circos.conf 内容
<<include colors_fonts_patterns.conf>>

<<include ideogram.conf>>
<<include ticks.conf>>

<image>
<<include etc/image.conf>>
</image>

karyotype   = kayrot.zebra.txt

chromosomes_units = 1000000
chromosomes       = zf1;zf2;zf3;zf5;zf6;zf7;zf8;zf9;zf10;zf11;zf12;zf13;zf14;zf15;zf16;zf17;zf18;zf19;zf20;zf21;zf22;zf23;zf24
chromosomes_display_default = no

# chromosomes_radius = zf2:0.9r;zf3:0.8r

# Links (bezier curves or straight lines) are defined in <links> blocks.
# Each link data set is defined within a named <link> block. The name
# of the block is arbitrary, but must be unique.
#
# As with highlights, parameters defined
# in the root of <links> affect all data sets and are considered
# global settings. Individual parameters value can be refined by
# values defined within <link> blocks, or additionally on each
# data line within the input file.

<links>

z             = 0
radius        = 0.975r
bezier_radius = 0.2r

<link>
show         = yes
color        = black_a5
thickness    = 2
file         = segdup.txt
record_limit = 5000
</link>

</links>

<<include etc/housekeeping.conf>>

#####
 kayrot.zebra.txt 内容:
chr - zf1 1 0 60348387 chr1
chr - zf2 2 0 60300535 chr2
chr - zf3 3 0 63268875 chr3
chr - zf4 4 0 62094674 chr4
chr - zf5 5 0 75682076 chr5
chr - zf6 6 0 59938730 chr6
chr - zf7 7 0 77276062 chr7
chr - zf8 8 0 56184764 chr8
chr - zf9 9 0 58232458 chr9
chr - zf10 10 0 46591165 chr10
chr - zf11 11 0 46661318 chr11
chr - zf12 12 0 50697277 chr12
chr - zf13 13 0 54093807 chr13
chr - zf14 14 0 53733890 chr14
chr - zf15 15 0 47442428 chr15
chr - zf16 16 0 58780682 chr16
chr - zf17 17 0 53984730 chr17
chr - zf18 18 0 49877487 chr18
chr - zf19 19 0 50254550 chr19
chr - zf20 20 0 55952139 chr20
chr - zf21 21 0 44544064 chr21
chr - zf22 22 0 42260999 chr22
chr - zf23 23 0 46386875 chr23
chr - zf24 24 0 43947579 chr24
chr - zf25 25 0 38499471 chr25
  评论这张
 
阅读(1505)| 评论(0)
推荐 转载

历史上的今天

在LOFTER的更多文章

评论

<#--最新日志,群博日志--> <#--推荐日志--> <#--引用记录--> <#--博主推荐--> <#--随机阅读--> <#--首页推荐--> <#--历史上的今天--> <#--被推荐日志--> <#--上一篇,下一篇--> <#-- 热度 --> <#-- 网易新闻广告 --> <#--右边模块结构--> <#--评论模块结构--> <#--引用模块结构--> <#--博主发起的投票-->
 
 
 
 
 
 
 
 
 
 
 
 
 
 

页脚

网易公司版权所有 ©1997-2017